J3_9QQB_023

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQB_023 not in the Motif Atlas

Geometric match to J3_8CRE_010

Geometric discrepancy: 0.1657

The information below is about J3_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9QQB|1|B5|C|1501
9QQB|1|B5|A|1502
9QQB|1|B5|G|1503
*
9QQB|1|B5|C|1535
9QQB|1|B5|G|1536
9QQB|1|B5|PSU|1537
9QQB|1|B5|A|1538
9QQB|1|B5|G|1539
*
9QQB|1|B5|U|1564
9QQB|1|B5|C|1565
9QQB|1|B5|C|1566
9QQB|1|B5|G|1567

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BR

Ribosomal protein L19

Chain Bp

60S ribosomal protein L37a