J3_9QQQ_011
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9QQQ|1|A|U|1212, 9QQQ|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_011 not in the Motif Atlas
- Homologous match to J3_6CZR_063
- Geometric discrepancy: 0.1842
- The information below is about J3_6CZR_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.1
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9QQQ|1|A|C|990
9QQQ|1|A|U|991
9QQQ|1|A|U|992
9QQQ|1|A|G|993
9QQQ|1|A|A|994
9QQQ|1|A|C|995
9QQQ|1|A|A|996
9QQQ|1|A|U|997
*
9QQQ|1|A|A|1044
9QQQ|1|A|C|1045
9QQQ|1|A|A|1046
9QQQ|1|A|G|1047
*
9QQQ|1|A|C|1210
9QQQ|1|A|U|1211
9QQQ|1|A|U|1212
9QQQ|1|A|A|1213
9QQQ|1|A|C|1214
9QQQ|1|A|G|1215
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain N
- Small ribosomal subunit protein uS14
Coloring options: