J3_9QQQ_015
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9QQQ|1|A|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_015 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1888
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9QQQ|1|A|U|1116
9QQQ|1|A|A|1117
9QQQ|1|A|U|1118
*
9QQQ|1|A|A|1155
9QQQ|1|A|G|1156
9QQQ|1|A|A|1157
9QQQ|1|A|C|1158
9QQQ|1|A|U|1159
9QQQ|1|A|G|1160
9QQQ|1|A|C|1161
*
9QQQ|1|A|G|1175
9QQQ|1|A|A|1176
9QQQ|1|A|G|1177
9QQQ|1|A|G|1178
9QQQ|1|A|A|1179
9QQQ|1|A|A|1180
9QQQ|1|A|G|1181
9QQQ|1|A|G|1182
9QQQ|1|A|U|1183
9QQQ|1|A|G|1184
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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