J3_9QQQ_017
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GC*GCGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_017 not in the Motif Atlas
- Geometric match to J3_8B0X_014
- Geometric discrepancy: 0.0756
- The information below is about J3_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 11
Unit IDs
9QQQ|1|a|G|30
9QQQ|1|a|C|31
*
9QQQ|1|a|G|474
9QQQ|1|a|C|475
9QQQ|1|a|G|476
9QQQ|1|a|A|477
9QQQ|1|a|A|478
9QQQ|1|a|A|479
9QQQ|1|a|A|480
9QQQ|1|a|G|481
*
9QQQ|1|a|C|509
9QQQ|1|a|C|510
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: