J3_9QQQ_022

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QQQ_022 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1115

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9QQQ|1|a|C|698
9QQQ|1|a|A|699
9QQQ|1|a|G|700
*
9QQQ|1|a|C|732
9QQQ|1|a|G|733
9QQQ|1|a|A|734
9QQQ|1|a|A|735
9QQQ|1|a|C|736
*
9QQQ|1|a|G|760
9QQQ|1|a|A|761
9QQQ|1|a|U|762
9QQQ|1|a|G|763

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2