J3_9QQQ_026
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QQQ_026 not in the Motif Atlas
- Homologous match to J3_7A0S_019
- Geometric discrepancy: 0.11
- The information below is about J3_7A0S_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9QQQ|1|a|G|1424
9QQQ|1|a|G|1425
9QQQ|1|a|G|1426
9QQQ|1|a|A|1427
9QQQ|1|a|C|1428
9QQQ|1|a|G|1429
*
9QQQ|1|a|C|1564
9QQQ|1|a|C|1565
*
9QQQ|1|a|G|1568
9QQQ|1|a|A|1569
9QQQ|1|a|A|1570
9QQQ|1|a|A|1571
9QQQ|1|a|A|1572
9QQQ|1|a|G|1573
9QQQ|1|a|C|1574
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: