J3_9QSA_002

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9QSA|1|A2|U|224

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|196
9QSA|1|A2|A|197
9QSA|1|A2|A|198
9QSA|1|A2|G|199
*
9QSA|1|A2|C|215
9QSA|1|A2|C|216
9QSA|1|A2|C|217
9QSA|1|A2|A|218
9QSA|1|A2|G|219
9QSA|1|A2|C|220
9QSA|1|A2|C|221
9QSA|1|A2|C|222
9QSA|1|A2|G|223
9QSA|1|A2|U|224
9QSA|1|A2|G|225
9QSA|1|A2|G|226
9QSA|1|A2|A|227
9QSA|1|A2|C|228
*
9QSA|1|A2|G|240
9QSA|1|A2|G|241
9QSA|1|A2|U|242
9QSA|1|A2|A|243
9QSA|1|A2|G|244

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F2

Large ribosomal subunit protein uL4

Chain S2

Large ribosomal subunit protein uL24