J3_9QSA_006

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

9QSA|1|A2|C|711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|451
9QSA|1|A2|A|452
9QSA|1|A2|G|453
9QSA|1|A2|U|454
9QSA|1|A2|C|455
*
9QSA|1|A2|G|708
9QSA|1|A2|U|709
9QSA|1|A2|G|710
9QSA|1|A2|C|711
9QSA|1|A2|G|712
*
9QSA|1|A2|C|1106
9QSA|1|A2|G|1107
9QSA|1|A2|A|1108
9QSA|1|A2|U|1109
9QSA|1|A2|G|1110

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain H2

Large ribosomal subunit protein eL6

Chain Y2

Large ribosomal subunit protein eL32

Chain Z2

Large ribosomal subunit protein eL33