J3_9QSA_013

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9QSA|1|A2|U|2543, 9QSA|1|A2|A|2544

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|G|2157
9QSA|1|A2|A|2158
9QSA|1|A2|A|2159
9QSA|1|A2|G|2160
*
9QSA|1|A2|C|2540
9QSA|1|A2|C|2541
9QSA|1|A2|A2M|2542
9QSA|1|A2|U|2543
9QSA|1|A2|A|2544
9QSA|1|A2|U|2545
9QSA|1|A2|C|2546
*
9QSA|1|A2|G|2555
9QSA|1|A2|U|2556
9QSA|1|A2|C|2557

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain a2

Large ribosomal subunit protein eL34

Chain d2

Large ribosomal subunit protein eL37

Chain f2

Large ribosomal subunit protein eL39