J3_9QSA_020

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9QSA|1|A2|A|3932, 9QSA|1|A2|A|3934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|C|3893
9QSA|1|A2|U|3894
9QSA|1|A2|C|3895
*
9QSA|1|A2|G|3919
9QSA|1|A2|A|3920
9QSA|1|A2|G|3921
*
9QSA|1|A2|C|3930
9QSA|1|A2|A|3931
9QSA|1|A2|A|3932
9QSA|1|A2|A|3933
9QSA|1|A2|A|3934
9QSA|1|A2|G|3935

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain E1

Large ribosomal subunit protein uL5

Chain G2

Large ribosomal subunit protein uL18

Chain N2

Large ribosomal subunit protein eL21