J3_9QSA_022

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUG*CGUUC*GUUGACGCACGUUC

Length

23 nucleotides

Bulged bases

9QSA|1|A2|U|4527, 9QSA|1|A2|G|4584, 9QSA|1|A2|C|4586, 9QSA|1|A2|A|4589, 9QSA|1|A2|C|4590

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|G|4403
9QSA|1|A2|U|4404
9QSA|1|A2|U|4405
9QSA|1|A2|G|4406
*
9QSA|1|A2|C|4524
9QSA|1|A2|G|4525
9QSA|1|A2|U|4526
9QSA|1|A2|U|4527
9QSA|1|A2|C|4528
*
9QSA|1|A2|G|4581
9QSA|1|A2|U|4582
9QSA|1|A2|U|4583
9QSA|1|A2|G|4584
9QSA|1|A2|A|4585
9QSA|1|A2|C|4586
9QSA|1|A2|G|4587
9QSA|1|A2|C|4588
9QSA|1|A2|A|4589
9QSA|1|A2|C|4590
9QSA|1|A2|G|4591
9QSA|1|A2|U|4592
9QSA|1|A2|U|4593
9QSA|1|A2|C|4594

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

Large ribosomal subunit protein eL14

Chain H2

Large ribosomal subunit protein eL6

Chain I2

Large ribosomal subunit protein uL13

Chain Z2

Large ribosomal subunit protein eL33