J3_9QSA_033

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|m2|C|1220
9QSA|1|m2|C|1221
9QSA|1|m2|A|1222
9QSA|1|m2|G|1223
*
9QSA|1|m2|C|1647
9QSA|1|m2|C|1648
9QSA|1|m2|A|1649
9QSA|1|m2|G|1650
9QSA|1|m2|U|1651
9QSA|1|m2|A|1652
9QSA|1|m2|A|1653
*
9QSA|1|m2|U|1675
9QSA|1|m2|G|1676
9QSA|1|m2|A|1677
9QSA|1|m2|U|1678
9QSA|1|m2|U|1679
9QSA|1|m2|A2M|1680
9QSA|1|m2|A|1681
9QSA|1|m2|G|1682

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain G3

Small ribosomal subunit protein eS28

Chain s2

Small ribosomal subunit protein uS7

Chain y2

Small ribosomal subunit protein uS9