J3_9QSA_035

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9QSA|1|m2|G|1258, 9QSA|1|m2|A|1260, 9QSA|1|m2|A|1262

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|m2|C|1239
9QSA|1|m2|U|1240
9QSA|1|m2|U|1241
9QSA|1|m2|A|1242
9QSA|1|m2|A|1243
9QSA|1|m2|U|1244
9QSA|1|m2|PSU|1245
9QSA|1|m2|U|1246
*
9QSA|1|m2|G|1257
9QSA|1|m2|G|1258
9QSA|1|m2|G|1259
9QSA|1|m2|A|1260
9QSA|1|m2|A|1261
9QSA|1|m2|A|1262
9QSA|1|m2|C|1263
9QSA|1|m2|C|1264
9QSA|1|m2|U|1265
9QSA|1|m2|C|1266
9QSA|1|m2|A|1267
9QSA|1|m2|C|1268
*
9QSA|1|m2|G|1518
9QSA|1|m2|G|1519
9QSA|1|m2|C|1520
9QSA|1|m2|U|1521
9QSA|1|m2|G|1522

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain A3

Small ribosomal subunit protein uS13

Chain C3

Small ribosomal subunit protein uS10

Chain H3

Small ribosomal subunit protein uS14

Chain x2

Small ribosomal subunit protein uS19