J3_9QSA_040

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9QSA|1|m2|U|1537, 9QSA|1|m2|G|1605

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|m2|C|1534
9QSA|1|m2|A|1535
9QSA|1|m2|C|1536
9QSA|1|m2|U|1537
9QSA|1|m2|G|1538
*
9QSA|1|m2|C|1599
9QSA|1|m2|G|1600
9QSA|1|m2|U|1601
9QSA|1|m2|G|1602
9QSA|1|m2|A|1603
9QSA|1|m2|U|1604
9QSA|1|m2|G|1605
9QSA|1|m2|G|1606
*
9QSA|1|m2|C|1637
9QSA|1|m2|G|1638
9QSA|1|m2|A|1639
9QSA|1|m2|G|1640

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain A3

Small ribosomal subunit protein uS13

Chain B3

Small ribosomal subunit protein eS19

Chain R3

Small ribosomal subunit protein eS25

Chain s2

Small ribosomal subunit protein uS7