J3_9QSJ_013

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QSJ_013 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1639

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9QSJ|1|A|U|1073
9QSJ|1|A|G|1074
*
9QSJ|1|A|U|1083
9QSJ|1|A|G|1084
9QSJ|1|A|U|1085
9QSJ|1|A|U|1086
*
9QSJ|1|A|G|1099
9QSJ|1|A|C|1100
9QSJ|1|A|A|1101
9QSJ|1|A|A|1102

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5

Chain U

Small ribosomal subunit protein bS21