J3_9QSJ_016
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 9QSJ|1|A|U|1240, 9QSJ|1|A|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QSJ_016 not in the Motif Atlas
- Homologous match to J3_6CZR_026
- Geometric discrepancy: 0.2497
- The information below is about J3_6CZR_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.5
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9QSJ|1|A|C|1237
9QSJ|1|A|A|1238
9QSJ|1|A|A|1239
9QSJ|1|A|U|1240
9QSJ|1|A|G|1241
*
9QSJ|1|A|C|1296
9QSJ|1|A|G|1297
9QSJ|1|A|U|1298
9QSJ|1|A|A|1299
9QSJ|1|A|G|1300
9QSJ|1|A|U|1301
9QSJ|1|A|C|1302
9QSJ|1|A|C|1303
*
9QSJ|1|A|G|1334
9QSJ|1|A|U|1335
9QSJ|1|A|C|1336
9QSJ|1|A|G|1337
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain M
- Small ribosomal subunit protein uS13
Coloring options: