J3_9QSJ_017

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QSJ_017 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.058

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9QSJ|1|a|G|30
9QSJ|1|a|C|31
*
9QSJ|1|a|G|474
9QSJ|1|a|C|475
9QSJ|1|a|G|476
9QSJ|1|a|A|477
9QSJ|1|a|A|478
9QSJ|1|a|A|479
9QSJ|1|a|A|480
9QSJ|1|a|G|481
*
9QSJ|1|a|C|509
9QSJ|1|a|C|510

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain t

Large ribosomal subunit protein uL24