J3_9R9O_002
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 9R9O|1|C1|U|117, 9R9O|1|C1|G|120, 9R9O|1|C1|A|121, 9R9O|1|C1|U|147, 9R9O|1|C1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9O|1|C1|C|113
9R9O|1|C1|A|114
9R9O|1|C1|A|115
9R9O|1|C1|A|116
9R9O|1|C1|U|117
9R9O|1|C1|U|118
9R9O|1|C1|U|119
9R9O|1|C1|G|120
9R9O|1|C1|A|121
9R9O|1|C1|A|122
9R9O|1|C1|A|123
9R9O|1|C1|U|124
*
9R9O|1|C1|A|144
9R9O|1|C1|G|145
9R9O|1|C1|U|146
9R9O|1|C1|U|147
9R9O|1|C1|G|148
9R9O|1|C1|U|149
9R9O|1|C1|A|150
9R9O|1|C1|A|151
9R9O|1|C1|U|152
9R9O|1|C1|U|153
9R9O|1|C1|U|154
9R9O|1|C1|G|155
9R9O|1|C1|G|156
9R9O|1|C1|A|157
9R9O|1|C1|G|158
*
9R9O|1|C1|C|263
9R9O|1|C1|G|264
9R9O|1|C1|A|265
9R9O|1|C1|A|266
9R9O|1|C1|G|267
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LG
- 60S ribosomal protein L8-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Li
- 60S ribosomal protein L36-A
Coloring options: