J3_9R9O_003

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

9R9O|1|C1|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9R9O_003 not in the Motif Atlas

Homologous match to J3_9PN5_003

Geometric discrepancy: 0.0653

The information below is about J3_9PN5_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76204.1

Basepair signature

cWW-cWW-cHH-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9R9O|1|C1|C|185
9R9O|1|C1|U|186
9R9O|1|C1|A|187
9R9O|1|C1|U|188
9R9O|1|C1|G|189
*
9R9O|1|C1|C|205
9R9O|1|C1|G|206
9R9O|1|C1|U|207
9R9O|1|C1|C|208
9R9O|1|C1|A|209
9R9O|1|C1|U|210
9R9O|1|C1|A|211
9R9O|1|C1|G|212
9R9O|1|C1|A|213
9R9O|1|C1|G|214
*
9R9O|1|C1|C|226
9R9O|1|C1|G|227
9R9O|1|C1|U|228
9R9O|1|C1|G|229
9R9O|1|C1|U|230
9R9O|1|C1|G|231

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A