J3_9R9O_013
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9O_013 not in the Motif Atlas
- Homologous match to J3_9PN5_014
- Geometric discrepancy: 0.0857
- The information below is about J3_9PN5_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9R9O|1|C1|U|1526
9R9O|1|C1|C|1527
9R9O|1|C1|G|1528
9R9O|1|C1|A|1529
9R9O|1|C1|U|1530
9R9O|1|C1|C|1531
*
9R9O|1|C1|G|1591
9R9O|1|C1|G|1592
9R9O|1|C1|A|1593
9R9O|1|C1|A|1594
9R9O|1|C1|U|1595
*
9R9O|1|C1|A|1612
9R9O|1|C1|A|1613
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- 60S ribosomal protein L25
- Chain Lg
- 60S ribosomal protein L34-A
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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