J3_9R9O_018
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 9R9O|1|C1|G|2549, 9R9O|1|C1|U|2550, 9R9O|1|C1|U|2551, 9R9O|1|C1|C|2552, 9R9O|1|C1|U|2553, 9R9O|1|C1|A|2554, 9R9O|1|C1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9O|1|C1|A|2529
9R9O|1|C1|G|2530
9R9O|1|C1|C|2531
9R9O|1|C1|U|2532
*
9R9O|1|C1|A|2547
9R9O|1|C1|C|2548
9R9O|1|C1|G|2549
9R9O|1|C1|U|2550
9R9O|1|C1|U|2551
9R9O|1|C1|C|2552
9R9O|1|C1|U|2553
9R9O|1|C1|A|2554
9R9O|1|C1|G|2555
9R9O|1|C1|C|2556
9R9O|1|C1|A|2557
9R9O|1|C1|U|2558
9R9O|1|C1|U|2559
9R9O|1|C1|C|2560
9R9O|1|C1|A|2561
9R9O|1|C1|A|2562
9R9O|1|C1|G|2563
*
9R9O|1|C1|U|2578
9R9O|1|C1|G|2579
9R9O|1|C1|A|2580
9R9O|1|C1|U|2581
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LG
- 60S ribosomal protein L8-A
- Chain LX
- 60S ribosomal protein L25
- Chain LZ
- 60S ribosomal protein L27-A
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34-A
- Chain Lp
- 60S ribosomal protein L43-A
Coloring options: