J3_9R9P_032

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

9R9P|1|C2|A|1217, 9R9P|1|C2|G|1445, 9R9P|1|C2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|C|1215
9R9P|1|C2|C|1216
9R9P|1|C2|A|1217
9R9P|1|C2|G|1218
9R9P|1|C2|A|1219
9R9P|1|C2|C|1220
*
9R9P|1|C2|G|1263
9R9P|1|C2|G|1264
9R9P|1|C2|G|1265
9R9P|1|C2|U|1266
9R9P|1|C2|G|1267
*
9R9P|1|C2|U|1442
9R9P|1|C2|U|1443
9R9P|1|C2|A|1444
9R9P|1|C2|G|1445
9R9P|1|C2|A|1446
9R9P|1|C2|C|1447
9R9P|1|C2|G|1448

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SK

40S ribosomal protein S10-A