J3_9R9P_033
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9R9P_033 not in the Motif Atlas
- Homologous match to J3_9H3G_039
- Geometric discrepancy: 0.1087
- The information below is about J3_9H3G_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9R9P|1|C2|U|1283
9R9P|1|C2|C|1284
9R9P|1|C2|U|1285
9R9P|1|C2|U|1286
9R9P|1|C2|A|1287
9R9P|1|C2|G|1288
*
9R9P|1|C2|C|1327
9R9P|1|C2|G|1328
9R9P|1|C2|A|1329
9R9P|1|C2|G|1330
9R9P|1|C2|A|1331
9R9P|1|C2|C|1332
*
9R9P|1|C2|G|1419
9R9P|1|C2|C|1420
9R9P|1|C2|A|1421
9R9P|1|C2|A|1422
9R9P|1|C2|U|1423
9R9P|1|C2|A|1424
Current chains
- Chain C2
- RNA (1642-MER)
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SR
- 40S ribosomal protein S17-B
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
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