J3_9R9P_037

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

9R9P|1|C2|U|1473, 9R9P|1|C2|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|C|1470
9R9P|1|C2|A|1471
9R9P|1|C2|C|1472
9R9P|1|C2|U|1473
9R9P|1|C2|G|1474
*
9R9P|1|C2|C|1533
9R9P|1|C2|G|1534
9R9P|1|C2|U|1535
9R9P|1|C2|G|1536
9R9P|1|C2|C|1537
9R9P|1|C2|U|1538
9R9P|1|C2|G|1539
9R9P|1|C2|G|1540
*
9R9P|1|C2|C|1571
9R9P|1|C2|G|1572
9R9P|1|C2|A|1573
9R9P|1|C2|G|1574

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18-A

Chain ST

40S ribosomal protein S19-A

Chain SZ

40S ribosomal protein S25-A