J3_9RBF_011

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9RBF|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RBF_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1967

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9RBF|1|A|C|990
9RBF|1|A|U|991
9RBF|1|A|U|992
9RBF|1|A|G|993
9RBF|1|A|A|994
9RBF|1|A|C|995
9RBF|1|A|A|996
9RBF|1|A|U|997
*
9RBF|1|A|A|1044
9RBF|1|A|C|1045
9RBF|1|A|A|1046
9RBF|1|A|G|1047
*
9RBF|1|A|C|1210
9RBF|1|A|U|1211
9RBF|1|A|U|1212
9RBF|1|A|A|1213
9RBF|1|A|C|1214
9RBF|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14