J3_9RFW_014

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUA*UAG*CAUAAG

Length

12 nucleotides

Bulged bases

9RFW|1|a|U|2334, 9RFW|1|a|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|C|2295
9RFW|1|a|U|2296
9RFW|1|a|A|2297
*
9RFW|1|a|U|2321
9RFW|1|a|A|2322
9RFW|1|a|G|2323
*
9RFW|1|a|C|2332
9RFW|1|a|A|2333
9RFW|1|a|U|2334
9RFW|1|a|A|2335
9RFW|1|a|A|2336
9RFW|1|a|G|2337

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5

Chain n

Large ribosomal subunit protein uL18

Chain v

Large ribosomal subunit protein bL27