J3_9RHU_006

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A1|A|817
9RHU|1|A1|G|818
9RHU|1|A1|A|819
9RHU|1|A1|G|820
*
9RHU|1|A1|C|830
9RHU|1|A1|A|831
9RHU|1|A1|G|832
*
9RHU|1|A1|C|844
9RHU|1|A1|U|845
9RHU|1|A1|G|846
9RHU|1|A1|G|847
9RHU|1|A1|A|848
9RHU|1|A1|U|849

Current chains

Chain A1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S4

Chain U1

Small ribosomal subunit protein uS4

Chain j1

40S ribosomal protein S24