J3_9RHU_011
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9RHU|1|A1|G|1257, 9RHU|1|A1|A|1259, 9RHU|1|A1|A|1261
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RHU|1|A1|C|1238
9RHU|1|A1|PSU|1239
9RHU|1|A1|U|1240
9RHU|1|A1|A|1241
9RHU|1|A1|A|1242
9RHU|1|A1|U|1243
9RHU|1|A1|U|1244
9RHU|1|A1|PSU|1245
*
9RHU|1|A1|G|1256
9RHU|1|A1|G|1257
9RHU|1|A1|G|1258
9RHU|1|A1|A|1259
9RHU|1|A1|A|1260
9RHU|1|A1|A|1261
9RHU|1|A1|C|1262
9RHU|1|A1|C|1263
9RHU|1|A1|U|1264
9RHU|1|A1|C|1265
9RHU|1|A1|A|1266
9RHU|1|A1|C|1267
*
9RHU|1|A1|G|1517
9RHU|1|A1|G|1518
9RHU|1|A1|C|1519
9RHU|1|A1|U|1520
9RHU|1|A1|G|1521
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain H1
- Small ribosomal subunit protein uS14
- Chain a1
- Small ribosomal subunit protein uS19
- Chain d1
- Small ribosomal subunit protein uS13
- Chain f1
- Small ribosomal subunit protein uS10
- Chain p2
- Eukaryotic peptide chain release factor subunit 1
Coloring options: