J3_9RHU_018

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9RHU|1|A3|G|219, 9RHU|1|A3|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|C|196
9RHU|1|A3|A|197
9RHU|1|A3|A|198
9RHU|1|A3|G|199
*
9RHU|1|A3|C|215
9RHU|1|A3|C|216
9RHU|1|A3|C|217
9RHU|1|A3|A|218
9RHU|1|A3|G|219
9RHU|1|A3|C|220
9RHU|1|A3|C|221
9RHU|1|A3|C|222
9RHU|1|A3|G|223
9RHU|1|A3|U|224
9RHU|1|A3|G|225
9RHU|1|A3|G|226
9RHU|1|A3|A|227
9RHU|1|A3|C|228
*
9RHU|1|A3|G|240
9RHU|1|A3|G|241
9RHU|1|A3|U|242
9RHU|1|A3|A|243
9RHU|1|A3|G|244

Current chains

Chain A3

28S rRNA

Nearby chains

Chain F3

Large ribosomal subunit protein uL4

Chain U2

Ribosomal protein L26