J3_9RHU_021
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9RHU|1|A3|G|409, 9RHU|1|A3|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RHU_021 not in the Motif Atlas
- Homologous match to J3_8GLP_026
- Geometric discrepancy: 0.0469
- The information below is about J3_8GLP_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9RHU|1|A3|U|380
9RHU|1|A3|U|381
9RHU|1|A3|G|382
9RHU|1|A3|A|383
9RHU|1|A3|A|384
9RHU|1|A3|A|385
9RHU|1|A3|A|386
9RHU|1|A3|G|387
9RHU|1|A3|A|388
9RHU|1|A3|A|389
9RHU|1|A3|C|390
*
9RHU|1|A3|G|401
9RHU|1|A3|A|402
9RHU|1|A3|G|403
9RHU|1|A3|U|404
9RHU|1|A3|U|405
9RHU|1|A3|C|406
9RHU|1|A3|A|407
9RHU|1|A3|A|408
9RHU|1|A3|G|409
9RHU|1|A3|A|410
9RHU|1|A3|G|411
9RHU|1|A3|G|412
9RHU|1|A3|G|413
9RHU|1|A3|C|414
9RHU|1|A3|G|415
*
9RHU|1|C3|C|19
9RHU|1|C3|A|20
Current chains
- Chain A3
- 28S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain F3
- Large ribosomal subunit protein uL4
- Chain L2
- Large ribosomal subunit protein uL22
- Chain U2
- Ribosomal protein L26
- Chain h2
- 60S ribosomal protein L39-like
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