J3_9RHU_029

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|U|2283
9RHU|1|A3|C|2284
9RHU|1|A3|G|2285
9RHU|1|A3|G|2286
9RHU|1|A3|U|2287
9RHU|1|A3|C|2288
*
9RHU|1|A3|G|2358
9RHU|1|A3|G|2359
9RHU|1|A3|A|2360
9RHU|1|A3|G|2361
9RHU|1|A3|U|2362
*
9RHU|1|A3|A|2379
9RHU|1|A3|A|2380

Current chains

Chain A3

28S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain MB

60S ribosomal protein L34

Chain T2

Large ribosomal subunit protein uL23

Chain g2

60S ribosomal protein L38

Chain h2

60S ribosomal protein L39-like