J3_9RHU_040

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9RHU|1|A3|U|4728, 9RHU|1|A3|C|4729

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|C|4709
9RHU|1|A3|A|4710
9RHU|1|A3|PSU|4711
*
9RHU|1|A3|G|4725
9RHU|1|A3|C|4726
9RHU|1|A3|U|4727
9RHU|1|A3|U|4728
9RHU|1|A3|C|4729
9RHU|1|A3|U|4730
*
9RHU|1|A3|A|4799
9RHU|1|A3|A|4800
9RHU|1|A3|G|4801
9RHU|1|A3|G|4802

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E3

Ribosomal protein L3

Chain L2

Large ribosomal subunit protein uL22

Chain Z2

60S ribosomal protein L31