J3_9RHU_042

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AC*GAGAAUU*ACACU

Length

14 nucleotides

Bulged bases

9RHU|1|C3|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|C3|A|44
9RHU|1|C3|C|45
*
9RHU|1|C3|G|58
9RHU|1|C3|A|59
9RHU|1|C3|G|60
9RHU|1|C3|A|61
9RHU|1|C3|A|62
9RHU|1|C3|U|63
9RHU|1|C3|U|64
*
9RHU|1|C3|A|95
9RHU|1|C3|C|96
9RHU|1|C3|A|97
9RHU|1|C3|C|98
9RHU|1|C3|U|99

Current chains

Chain C3

5.8S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain T2

Large ribosomal subunit protein uL23

Chain d2

60S ribosomal protein L35

Chain f2

Ribosomal protein L37

Chain h2

60S ribosomal protein L39-like