J3_9RHU_042
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 9RHU|1|C3|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RHU_042 not in the Motif Atlas
- Homologous match to J3_8GLP_039
- Geometric discrepancy: 0.0354
- The information below is about J3_8GLP_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.4
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9RHU|1|C3|A|44
9RHU|1|C3|C|45
*
9RHU|1|C3|G|58
9RHU|1|C3|A|59
9RHU|1|C3|G|60
9RHU|1|C3|A|61
9RHU|1|C3|A|62
9RHU|1|C3|U|63
9RHU|1|C3|U|64
*
9RHU|1|C3|A|95
9RHU|1|C3|C|96
9RHU|1|C3|A|97
9RHU|1|C3|C|98
9RHU|1|C3|U|99
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain T2
- Large ribosomal subunit protein uL23
- Chain d2
- 60S ribosomal protein L35
- Chain f2
- Ribosomal protein L37
- Chain h2
- 60S ribosomal protein L39-like
Coloring options: