J3_9RJA_007

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RJA_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1117

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9RJA|1|A|C|936
9RJA|1|A|A|937
9RJA|1|A|A|938
9RJA|1|A|G|939
*
9RJA|1|A|C|1344
9RJA|1|A|U|1345
9RJA|1|A|A|1346
9RJA|1|A|G|1347
9RJA|1|A|U|1348
9RJA|1|A|A|1349
9RJA|1|A|A|1350
*
9RJA|1|A|U|1372
9RJA|1|A|G|1373
9RJA|1|A|A|1374
9RJA|1|A|A|1375
9RJA|1|A|U|1376
9RJA|1|A|A|1377
9RJA|1|A|C|1378
9RJA|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

Small ribosomal subunit protein uS9