J3_9RJA_010
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 9RJA|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RJA_010 not in the Motif Atlas
- Geometric match to J3_8B0X_008
- Geometric discrepancy: 0.0946
- The information below is about J3_8B0X_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9RJA|1|A|C|990
9RJA|1|A|U|991
9RJA|1|A|U|992
9RJA|1|A|G|993
*
9RJA|1|A|C|1045
9RJA|1|A|A|1046
9RJA|1|A|G|1047
*
9RJA|1|A|C|1210
9RJA|1|A|U|1211
9RJA|1|A|U|1212
9RJA|1|A|A|1213
9RJA|1|A|C|1214
9RJA|1|A|G|1215
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- Small ribosomal subunit protein uS14
Coloring options: