J3_9RJA_011

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9RJA|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RJA_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1935

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9RJA|1|A|C|990
9RJA|1|A|U|991
9RJA|1|A|U|992
9RJA|1|A|G|993
9RJA|1|A|A|994
9RJA|1|A|C|995
9RJA|1|A|A|996
9RJA|1|A|U|997
*
9RJA|1|A|A|1044
9RJA|1|A|C|1045
9RJA|1|A|A|1046
9RJA|1|A|G|1047
*
9RJA|1|A|C|1210
9RJA|1|A|U|1211
9RJA|1|A|U|1212
9RJA|1|A|A|1213
9RJA|1|A|C|1214
9RJA|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14