J3_9RJA_021

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9RJA|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RJA_021 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0271

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9RJA|1|a|G|297
9RJA|1|a|G|298
9RJA|1|a|A|299
9RJA|1|a|A|300
9RJA|1|a|G|301
*
9RJA|1|a|C|316
9RJA|1|a|G|317
9RJA|1|a|C|318
9RJA|1|a|G|319
9RJA|1|a|A|320
9RJA|1|a|U|321
9RJA|1|a|A|322
9RJA|1|a|C|323
9RJA|1|a|A|324
9RJA|1|a|G|325
*
9RJA|1|a|C|337
9RJA|1|a|G|338
9RJA|1|a|U|339
9RJA|1|a|A|340
9RJA|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24