J3_9RJA_027

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RJA_027 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1026

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9RJA|1|a|G|1424
9RJA|1|a|G|1425
9RJA|1|a|G|1426
9RJA|1|a|A|1427
9RJA|1|a|C|1428
9RJA|1|a|G|1429
*
9RJA|1|a|C|1564
9RJA|1|a|C|1565
*
9RJA|1|a|G|1568
9RJA|1|a|A|1569
9RJA|1|a|A|1570
9RJA|1|a|A|1571
9RJA|1|a|A|1572
9RJA|1|a|G|1573
9RJA|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2