J3_9ROR_004
3D structure
- PDB id
- 9ROR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Outward conformation) (State M3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- CCUC*GCAGUAA*UGAACAGGG
- Length
- 20 nucleotides
- Bulged bases
- 9ROR|1|A|C|1429
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9ROR_004 not in the Motif Atlas
- Homologous match to J3_6CZR_061
- Geometric discrepancy: 0.4371
- The information below is about J3_6CZR_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.3
- Basepair signature
- cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9ROR|1|A|C|1191
9ROR|1|A|C|1192
9ROR|1|A|U|1193
9ROR|1|A|C|1194
*
9ROR|1|A|G|1428
9ROR|1|A|C|1429
9ROR|1|A|A|1430
9ROR|1|A|G|1431
9ROR|1|A|U|1432
9ROR|1|A|A|1433
9ROR|1|A|A|1434
*
9ROR|1|A|U|1456
9ROR|1|A|G|1457
9ROR|1|A|A|1458
9ROR|1|A|A|1459
9ROR|1|A|C|1460
9ROR|1|A|A|1461
9ROR|1|A|G|1462
9ROR|1|A|G|1463
9ROR|1|A|G|1464
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
Coloring options: