J3_9RPV_036

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|1546
9RPV|1|M5|A|1547
9RPV|1|M5|G|1548
*
9RPV|1|M5|C|1580
9RPV|1|M5|G|1581
9RPV|1|M5|PSU|1582
9RPV|1|M5|A|1583
9RPV|1|M5|G|1584
*
9RPV|1|M5|U|1609
9RPV|1|M5|C|1610
9RPV|1|M5|C|1611
9RPV|1|M5|G|1612

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MA

Large ribosomal subunit protein uL2

Chain MR

60S ribosomal protein L19

Chain Mg

60S ribosomal protein L34

Chain Mp

60S ribosomal protein L37a