J3_9RPV_039

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9RPV|1|M5|U|2788, 9RPV|1|M5|A|2789

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|G|2402
9RPV|1|M5|A|2403
9RPV|1|M5|A|2404
9RPV|1|M5|G|2405
*
9RPV|1|M5|C|2785
9RPV|1|M5|C|2786
9RPV|1|M5|A2M|2787
9RPV|1|M5|U|2788
9RPV|1|M5|A|2789
9RPV|1|M5|U|2790
9RPV|1|M5|C|2791
*
9RPV|1|M5|G|2800
9RPV|1|M5|U|2801
9RPV|1|M5|C|2802

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain Mg

60S ribosomal protein L34

Chain Mj

Large ribosomal subunit protein eL37

Chain Ml

60S ribosomal protein L39