J3_9RPV_042

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9RPV|1|M5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|A|2551
9RPV|1|M5|G|2552
9RPV|1|M5|A|2553
9RPV|1|M5|U|2554
9RPV|1|M5|G|2555
*
9RPV|1|M5|C|2572
9RPV|1|M5|A|2573
9RPV|1|M5|G|2574
9RPV|1|M5|U|2575
*
9RPV|1|M5|A|2757
9RPV|1|M5|G|2758
9RPV|1|M5|G|2759
9RPV|1|M5|G|2760
9RPV|1|M5|U|2761
9RPV|1|M5|G|2762
9RPV|1|M5|U|2763
9RPV|1|M5|A|2764
9RPV|1|M5|A|2765
9RPV|1|M5|A|2766
9RPV|1|M5|U|2767

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MZ

60S ribosomal protein L27