J3_9RPV_052

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9RPV|1|M5|U|4882, 9RPV|1|M5|A|4938, 9RPV|1|M5|C|4940, 9RPV|1|M5|A|4943, 9RPV|1|M5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|G|4751
9RPV|1|M5|U|4752
9RPV|1|M5|U|4753
9RPV|1|M5|G|4754
*
9RPV|1|M5|C|4879
9RPV|1|M5|C|4880
9RPV|1|M5|U|4881
9RPV|1|M5|U|4882
9RPV|1|M5|C|4883
*
9RPV|1|M5|G|4936
9RPV|1|M5|C|4937
9RPV|1|M5|A|4938
9RPV|1|M5|C|4939
9RPV|1|M5|C|4940
9RPV|1|M5|G|4941
9RPV|1|M5|C|4942
9RPV|1|M5|A|4943
9RPV|1|M5|C|4944
9RPV|1|M5|G|4945
9RPV|1|M5|U|4946
9RPV|1|M5|U|4947
9RPV|1|M5|C|4948

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ME

Large ribosomal subunit protein eL6

Chain MM

60S ribosomal protein L14

Chain MO

60S ribosomal protein L13a

Chain Mf

60S ribosomal protein L35a