J3_9RTV_005

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9RTV|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RTV_005 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0695

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9RTV|1|A|G|297
9RTV|1|A|G|298
9RTV|1|A|A|299
9RTV|1|A|A|300
9RTV|1|A|G|301
*
9RTV|1|A|C|316
9RTV|1|A|G|317
9RTV|1|A|C|318
9RTV|1|A|G|319
9RTV|1|A|A|320
9RTV|1|A|U|321
9RTV|1|A|A|322
9RTV|1|A|C|323
9RTV|1|A|A|324
9RTV|1|A|G|325
*
9RTV|1|A|C|337
9RTV|1|A|G|338
9RTV|1|A|U|339
9RTV|1|A|A|340
9RTV|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24