J3_9RU7_032

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9RU7|1|S2|G|1274, 9RU7|1|S2|G|1507, 9RU7|1|S2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|S2|C|1272
9RU7|1|S2|C|1273
9RU7|1|S2|G|1274
9RU7|1|S2|G|1275
9RU7|1|S2|A|1276
9RU7|1|S2|C|1277
*
9RU7|1|S2|G|1320
9RU7|1|S2|G|1321
9RU7|1|S2|G|1322
9RU7|1|S2|U|1323
9RU7|1|S2|G|1324
*
9RU7|1|S2|U|1504
9RU7|1|S2|U|1505
9RU7|1|S2|A|1506
9RU7|1|S2|G|1507
9RU7|1|S2|A|1508
9RU7|1|S2|U|1509
9RU7|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin