J3_9RU9_011

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9RU9|1|L5|U|2788, 9RU9|1|L5|A|2789, 9RU9|1|L5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|G|2402
9RU9|1|L5|A|2403
9RU9|1|L5|A|2404
9RU9|1|L5|G|2405
*
9RU9|1|L5|C|2785
9RU9|1|L5|C|2786
9RU9|1|L5|A|2787
9RU9|1|L5|U|2788
9RU9|1|L5|A|2789
9RU9|1|L5|U|2790
9RU9|1|L5|C|2791
*
9RU9|1|L5|G|2800
9RU9|1|L5|U|2801
9RU9|1|L5|C|2802

Current chains

Chain L5

23S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

60S ribosomal protein L39