J3_9RU9_011
3D structure
- PDB id
- 9RU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9RU9|1|L5|U|2788, 9RU9|1|L5|A|2789, 9RU9|1|L5|U|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RU9_011 not in the Motif Atlas
- Homologous match to J3_8GLP_005
- Geometric discrepancy: 0.0785
- The information below is about J3_8GLP_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.4
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9RU9|1|L5|G|2402
9RU9|1|L5|A|2403
9RU9|1|L5|A|2404
9RU9|1|L5|G|2405
*
9RU9|1|L5|C|2785
9RU9|1|L5|C|2786
9RU9|1|L5|A|2787
9RU9|1|L5|U|2788
9RU9|1|L5|A|2789
9RU9|1|L5|U|2790
9RU9|1|L5|C|2791
*
9RU9|1|L5|G|2800
9RU9|1|L5|U|2801
9RU9|1|L5|C|2802
Current chains
- Chain L5
- 23S rRNA
Nearby chains
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- 60S ribosomal protein L39
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