J3_9RU9_014

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9RU9|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|A|2551
9RU9|1|L5|G|2552
9RU9|1|L5|A|2553
9RU9|1|L5|U|2554
9RU9|1|L5|G|2555
*
9RU9|1|L5|C|2572
9RU9|1|L5|A|2573
9RU9|1|L5|G|2574
9RU9|1|L5|U|2575
*
9RU9|1|L5|A|2757
9RU9|1|L5|G|2758
9RU9|1|L5|G|2759
9RU9|1|L5|G|2760
9RU9|1|L5|U|2761
9RU9|1|L5|G|2762
9RU9|1|L5|U|2763
9RU9|1|L5|A|2764
9RU9|1|L5|A|2765
9RU9|1|L5|A|2766
9RU9|1|L5|U|2767

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27