J3_9RU9_016

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|A|2598
9RU9|1|L5|G|2599
9RU9|1|L5|A|2600
9RU9|1|L5|A|2601
9RU9|1|L5|G|2602
*
9RU9|1|L5|C|2737
9RU9|1|L5|C|2738
*
9RU9|1|L5|G|2742
9RU9|1|L5|A|2743
9RU9|1|L5|A|2744
9RU9|1|L5|A|2745
9RU9|1|L5|A|2746
9RU9|1|L5|U|2747

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a