J3_9RU9_022

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9RU9|1|L5|U|4882, 9RU9|1|L5|A|4938, 9RU9|1|L5|C|4940, 9RU9|1|L5|A|4943, 9RU9|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|G|4751
9RU9|1|L5|U|4752
9RU9|1|L5|U|4753
9RU9|1|L5|G|4754
*
9RU9|1|L5|C|4879
9RU9|1|L5|C|4880
9RU9|1|L5|U|4881
9RU9|1|L5|U|4882
9RU9|1|L5|C|4883
*
9RU9|1|L5|G|4936
9RU9|1|L5|C|4937
9RU9|1|L5|A|4938
9RU9|1|L5|C|4939
9RU9|1|L5|C|4940
9RU9|1|L5|G|4941
9RU9|1|L5|C|4942
9RU9|1|L5|A|4943
9RU9|1|L5|C|4944
9RU9|1|L5|G|4945
9RU9|1|L5|U|4946
9RU9|1|L5|U|4947
9RU9|1|L5|C|4948

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a