J3_9RUA_021

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9RUA|1|L5|U|4882, 9RUA|1|L5|A|4938, 9RUA|1|L5|C|4940, 9RUA|1|L5|A|4943, 9RUA|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUA|1|L5|G|4751
9RUA|1|L5|U|4752
9RUA|1|L5|U|4753
9RUA|1|L5|G|4754
*
9RUA|1|L5|C|4879
9RUA|1|L5|C|4880
9RUA|1|L5|U|4881
9RUA|1|L5|U|4882
9RUA|1|L5|C|4883
*
9RUA|1|L5|G|4936
9RUA|1|L5|C|4937
9RUA|1|L5|A|4938
9RUA|1|L5|C|4939
9RUA|1|L5|C|4940
9RUA|1|L5|G|4941
9RUA|1|L5|C|4942
9RUA|1|L5|A|4943
9RUA|1|L5|C|4944
9RUA|1|L5|G|4945
9RUA|1|L5|U|4946
9RUA|1|L5|U|4947
9RUA|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

Large ribosomal subunit protein eL33